Project measure / variable:   Everett1   incisor_condyle

ID, description, units MPD:11008   incisor_condyle   mandible, infradentale to posterior condyle   [mm]  
Data set, strains Everett1   inbred   14 strains     sex: both     age: 8-9wks
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  STRAIN COMPARISON PLOT
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Everett1 - mandible, infradentale to posterior condyle



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains13 strains
Mean of the strain means10.6   mm 10.7   mm
Median of the strain means10.6   mm 10.8   mm
SD of the strain means± 0.574 ± 0.635
Coefficient of variation (CV)0.0544 0.0596
Min–max range of strain means9.30   –   11.2   mm 9.35   –   11.4   mm
Mean sample size per strain10.0   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.4172 0.4172 10.4699 0.0014
strain 12 87.4253 7.2854 182.8318 < 0.0001
sex:strain 12 0.6937 0.0578 1.4507 0.1442
Residuals 234 9.3244 0.0398


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.1 0.184   10 0.0581 0.0165 10.8, 11.4 0.95
129S1/SvImJ m 11.2 0.208   10 0.0659 0.0187 10.8, 11.5 0.84
A/J f 10.3 0.169   10 0.0533 0.0163 10.1, 10.6 -0.44
A/J m 10.4 0.242   10 0.0764 0.0232 9.92, 10.8 -0.42
BALB/cByJ f 11.2 0.219   10 0.0691 0.0195 10.8, 11.4 1.13
BALB/cByJ m 11.1 0.114   10 0.0361 0.0102 10.9, 11.3 0.69
C3H/HeJ f 10.8 0.256   10 0.081 0.0238 10.2, 11.2 0.43
C3H/HeJ m 11.0 0.15   10 0.0473 0.0136 10.8, 11.2 0.53
C57BL/10J f 11.2 0.254   10 0.0803 0.0227 10.6, 11.6 1.13
C57BL/10J m 11.3 0.361   10 0.114 0.032 10.5, 11.8 1.0
C57BL/6J f 11.2 0.196   10 0.062 0.0176 10.8, 11.4 1.13
C57BL/6J m 11.4 0.163   10 0.0516 0.0144 11.2, 11.6 1.16
CAST/EiJ f 9.3 0.124   10 0.0393 0.0134 9.09, 9.5 -2.18
CAST/EiJ m 9.35 0.157   10 0.0498 0.0168 9.13, 9.68 -2.07
CBA/J f 10.4 0.253   10 0.08 0.0243 9.75, 10.7 -0.27
CBA/J m 10.6 0.267   10 0.0844 0.0251 10.1, 11.0 -0.1
DBA/2J f 10.5 0.216   10 0.0683 0.0206 10.1, 10.8 -0.09
DBA/2J m 10.5 0.152   10 0.0482 0.0145 10.2, 10.7 -0.26
FVB/NJ f 10.7 0.129   10 0.0409 0.0121 10.4, 10.9 0.26
FVB/NJ m 10.8 0.165   10 0.0523 0.0153 10.6, 10.9 0.21
MOLF/EiJ f 9.64 0.14   10 0.0443 0.0145 9.28, 9.77 -1.59
MOLF/EiJ m 9.48 0.177   10 0.0559 0.0186 9.13, 9.79 -1.86
PERA/EiJ f 10.5 0.187   10 0.0593 0.0178 10.2, 10.8 -0.09
PERA/EiJ m 10.6 0.116   10 0.0367 0.0109 10.4, 10.8 -0.1
SJL/J f 10.7 0.219   10 0.0691 0.0205 10.3, 10.9 0.26
SJL/J m 10.9 0.165   10 0.0521 0.0152 10.4, 11.1 0.37
SPRET/EiJ f 10.2 0.331   8 0.117 0.0326 9.56, 10.4 -0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.14 0.0631 11.2644 11.0156
129S1/SvImJ m 11.17 0.0631 11.2944 11.0456
A/J f 10.336 0.0631 10.4604 10.2116
A/J m 10.402 0.0631 10.5264 10.2776
BALB/cByJ f 11.2 0.0631 11.3244 11.0756
BALB/cByJ m 11.145 0.0631 11.2694 11.0206
C3H/HeJ f 10.75 0.0631 10.8744 10.6256
C3H/HeJ m 10.975 0.0631 11.0994 10.8506
C57BL/10J f 11.185 0.0631 11.3094 11.0606
C57BL/10J m 11.285 0.0631 11.4094 11.1606
C57BL/6J f 11.175 0.0631 11.2994 11.0506
C57BL/6J m 11.35 0.0631 11.4744 11.2256
CAST/EiJ f 9.296 0.0631 9.4204 9.1716
CAST/EiJ m 9.3485 0.0631 9.4729 9.2241
CBA/J f 10.425 0.0631 10.5494 10.3006
CBA/J m 10.6215 0.0631 10.7459 10.4971
DBA/2J f 10.4665 0.0631 10.5909 10.3421
DBA/2J m 10.49 0.0631 10.6144 10.3656
FVB/NJ f 10.685 0.0631 10.8094 10.5606
FVB/NJ m 10.78 0.0631 10.9044 10.6556
MOLF/EiJ f 9.641 0.0631 9.7654 9.5166
MOLF/EiJ m 9.484 0.0631 9.6084 9.3596
PERA/EiJ f 10.525 0.0631 10.6494 10.4006
PERA/EiJ m 10.62 0.0631 10.7444 10.4956
SJL/J f 10.665 0.0631 10.7894 10.5406
SJL/J m 10.86 0.0631 10.9844 10.7356


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 11.155 0.0446 11.2429 11.0671
A/J both 10.369 0.0446 10.4569 10.2811
BALB/cByJ both 11.1725 0.0446 11.2604 11.0846
C3H/HeJ both 10.8625 0.0446 10.9504 10.7746
C57BL/10J both 11.235 0.0446 11.3229 11.1471
C57BL/6J both 11.2625 0.0446 11.3504 11.1746
CAST/EiJ both 9.3222 0.0446 9.4102 9.2343
CBA/J both 10.5232 0.0446 10.6112 10.4353
DBA/2J both 10.4782 0.0446 10.5662 10.3903
FVB/NJ both 10.7325 0.0446 10.8204 10.6446
MOLF/EiJ both 9.5625 0.0446 9.6504 9.4746
PERA/EiJ both 10.5725 0.0446 10.6604 10.4846
SJL/J both 10.7625 0.0446 10.8504 10.6746




  GWAS USING LINEAR MIXED MODELS