Project measure / variable:   Wahlsten1   pct_move

ID, description, units MPD:10845   pct_move   percentage of time spent moving; average of 5 min   [%]  
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 9wks
Procedure elevated plus maze
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  STRAIN COMPARISON PLOT
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Wahlsten1 - percentage of time spent moving; average of 5 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means27.9   % 29.0   %
Median of the strain means28.0   % 29.5   %
SD of the strain means± 12.2 ± 10.2
Coefficient of variation (CV)0.436 0.354
Min–max range of strain means4.25   –   53.1   % 8.18   –   49.6   %
Mean sample size per strain8.9   mice 8.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 26.4247 26.4247 0.1341 0.7145
strain 20 39593.7168 1979.6858 10.0455 < 0.0001
sex:strain 20 3489.4138 174.4707 0.8853 0.6063
Residuals 329 64836.7097 197.0721


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 36.8 13.1   7 4.95 0.356 17.9, 54.3 0.73
129S1/SvImJ m 23.3 14.6   10 4.61 0.624 7.42, 53.8 -0.55
A/J f 8.76 5.87   8 2.08 0.67 1.73, 21.8 -1.57
A/J m 8.18 6.52   8 2.31 0.798 0.82, 17.5 -2.03
AKR/J f 26.6 7.01   8 2.48 0.264 18.3, 39.9 -0.11
AKR/J m 29.5 9.45   8 3.34 0.32 17.7, 42.5 0.05
BALB/cByJ f 20.7 6.69   10 2.12 0.323 10.9, 30.1 -0.59
BALB/cByJ m 30.8 6.98   8 2.47 0.227 22.7, 40.0 0.18
BTBR T+ Itpr3tf/J f 52.8 24.5   12 7.07 0.464 20.4, 80.7 2.04
BTBR T+ Itpr3tf/J m 49.0 32.4   5 14.5 0.662 17.9, 84.3 1.96
C3H/HeJ f 22.8 7.48   8 2.65 0.329 10.5, 31.6 -0.42
C3H/HeJ m 25.9 12.3   8 4.35 0.476 6.92, 39.1 -0.3
C57BL/6J f 53.1 19.5   8 6.89 0.367 24.9, 83.2 2.07
C57BL/6J m 49.6 27.2   10 8.59 0.547 17.7, 81.5 2.02
C57L/J f 31.1 10.8   10 3.42 0.347 17.7, 44.3 0.26
C57L/J m 32.0 10.5   6 4.29 0.328 21.2, 48.7 0.3
C58/J f 35.3 16.9   8 5.98 0.479 13.5, 63.9 0.61
C58/J m 35.2 20.4   10 6.45 0.58 10.9, 63.8 0.61
CAST/EiJ f 18.3 7.78   8 2.75 0.425 3.85, 25.8 -0.79
CAST/EiJ m 19.7 6.81   9 2.27 0.346 11.2, 31.8 -0.9
DBA/2J f 21.1 9.16   8 3.24 0.434 9.21, 31.6 -0.56
DBA/2J m 22.1 9.89   8 3.5 0.447 9.0, 35.3 -0.67
FVB/NJ f 32.8 11.9   10 3.78 0.364 14.7, 50.4 0.4
FVB/NJ m 32.6 9.55   11 2.88 0.293 21.4, 47.8 0.36
MOLF/EiJ f 27.5 14.1   8 4.97 0.511 16.2, 51.9 -0.03
MOLF/EiJ m 24.2 9.41   7 3.56 0.389 16.5, 44.0 -0.46
NOD/ShiLtJ f 28.0 11.9   12 3.42 0.424 0.54, 53.8 0.01
NOD/ShiLtJ m 40.0 11.7   12 3.38 0.293 17.9, 60.5 1.08
NZB/BlNJ f 37.2 28.7   6 11.7 0.772 8.23, 74.6 0.76
NZB/BlNJ m 39.0 21.8   12 6.3 0.56 13.3, 84.6 0.98
PERA/EiJ f 23.1 6.5   10 2.06 0.281 13.0, 35.1 -0.4
PERA/EiJ m 16.6 7.93   11 2.39 0.479 4.67, 30.0 -1.21
PL/J f 34.6 18.2   12 5.25 0.526 13.2, 74.4 0.55
PL/J m 35.2 11.6   8 4.09 0.329 22.1, 56.6 0.61
SJL/J f 12.4 3.31   8 1.17 0.267 7.65, 16.2 -1.27
SJL/J m 19.9 12.4   10 3.93 0.623 7.22, 47.5 -0.88
SM/J f 28.7 12.4   14 3.32 0.433 8.85, 47.7 0.06
SM/J m 22.5 13.0   8 4.59 0.575 8.35, 42.0 -0.63
SPRET/EiJ f 4.25 4.02   6 1.64 0.946 1.12, 12.1 -1.94
SPRET/EiJ m 23.0 2.4   2   1.7 0.105 21.3, 24.7 -0.58
SWR/J f 30.5 10.0   9 3.34 0.328 17.8, 47.0 0.21
SWR/J m 29.7 10.6   10 3.36 0.357 16.6, 47.9 0.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 36.8286 5.306 47.2664 26.3907
129S1/SvImJ m 23.332 4.4393 32.065 14.599
A/J f 8.76 4.9633 18.5237 0.0
A/J m 8.1762 4.9633 17.94 0.0
AKR/J f 26.575 4.9633 36.3387 16.8113
AKR/J m 29.4875 4.9633 39.2512 19.7238
BALB/cByJ f 20.74 4.4393 29.473 12.007
BALB/cByJ m 30.8125 4.9633 40.5762 21.0488
BTBR T+ Itpr3tf/J f 52.7833 4.0525 60.7554 44.8113
BTBR T+ Itpr3tf/J m 49.0 6.2781 61.3503 36.6497
C3H/HeJ f 22.75 4.9633 32.5137 12.9863
C3H/HeJ m 25.865 4.9633 35.6287 16.1013
C57BL/6J f 53.15 4.9633 62.9137 43.3863
C57BL/6J m 49.63 4.4393 58.363 40.897
C57L/J f 31.08 4.4393 39.813 22.347
C57L/J m 32.0333 5.7311 43.3075 20.7591
C58/J f 35.3125 4.9633 45.0762 25.5488
C58/J m 35.17 4.4393 43.903 26.437
CAST/EiJ f 18.3063 4.9633 28.07 8.5425
CAST/EiJ m 19.6667 4.6794 28.872 10.4613
DBA/2J f 21.1238 4.9633 30.8875 11.36
DBA/2J m 22.1375 4.9633 31.9012 12.3738
FVB/NJ f 32.82 4.4393 41.553 24.087
FVB/NJ m 32.6364 4.2327 40.9629 24.3098
MOLF/EiJ f 27.5 4.9633 37.2637 17.7363
MOLF/EiJ m 24.2143 5.306 34.6522 13.7764
NOD/ShiLtJ f 27.9533 4.0525 35.9254 19.9813
NOD/ShiLtJ m 40.0 4.0525 47.9721 32.0279
NZB/BlNJ f 37.1883 5.7311 48.4625 25.9141
NZB/BlNJ m 38.9583 4.0525 46.9304 30.9863
PERA/EiJ f 23.12 4.4393 31.853 14.387
PERA/EiJ m 16.5573 4.2327 24.8838 8.2307
PL/J f 34.6 4.0525 42.5721 26.6279
PL/J m 35.175 4.9633 44.9387 25.4113
SJL/J f 12.4113 4.9633 22.175 2.6475
SJL/J m 19.949 4.4393 28.682 11.216
SM/J f 28.725 3.7519 36.1057 21.3443
SM/J m 22.5438 4.9633 32.3075 12.78
SPRET/EiJ f 4.2483 5.7311 15.5225 0.0
SPRET/EiJ m 23.0 9.9265 42.5275 3.4725
SWR/J f 30.4889 4.6794 39.6942 21.2835
SWR/J m 29.74 4.4393 38.473 21.007


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 30.0803 3.4591 36.8849 23.2756
A/J both 8.4681 3.5096 15.3721 1.5641
AKR/J both 28.0312 3.5096 34.9353 21.1272
BALB/cByJ both 25.7763 3.3295 32.326 19.2265
BTBR T+ Itpr3tf/J both 50.8917 3.7362 58.2415 43.5418
C3H/HeJ both 24.3075 3.5096 31.2115 17.4035
C57BL/6J both 51.39 3.3295 57.9397 44.8403
C57L/J both 31.5567 3.6247 38.6871 24.4262
C58/J both 35.2412 3.3295 41.791 28.6915
CAST/EiJ both 18.9865 3.4107 25.6959 12.277
DBA/2J both 21.6306 3.5096 28.5346 14.7266
FVB/NJ both 32.7282 3.0669 38.7613 26.695
MOLF/EiJ both 25.8571 3.6327 33.0035 18.7108
NOD/ShiLtJ both 33.9767 2.8655 39.6138 28.3396
NZB/BlNJ both 38.0733 3.5096 44.9773 31.1693
PERA/EiJ both 19.8386 3.0669 25.8718 13.8055
PL/J both 34.8875 3.2038 41.19 28.585
SJL/J both 16.1801 3.3295 22.7298 9.6304
SM/J both 25.6344 3.1109 31.7541 19.5146
SPRET/EiJ both 13.6242 5.7311 24.8984 2.35
SWR/J both 30.1144 3.2251 36.4588 23.7701




  GWAS USING LINEAR MIXED MODELS