Please note: EMMAserver is hosted at UCLA on servers not under MPD's control.

These association analyses require that phenotype variables have reasonably normal distributions. EMMAserver supports inbred, AXB, BXA, BXD, BXH, and CXB strains.

• Generate a phenotype input file formatted for UCLA/ZarLab EMMAserver

You'll create a tab-delimited text file that you can save locally, then log in to UCLA/ZarLab EMMA Server site (prior user registration required), and upload the file for analysis. More info on EMMA (Efficient Mixed-Model Association)
Generate file including all applicable strains omitting wild-derived strains  

References:

Kirby A, Kang HM, Wade CM, Cotsapas C, Kostem E, Han B, Furlotte N, Kang EY, Rivas M, Bogue MA, Frazer KA, Johnson FM, Beilharz EJ, Cox DR, Eskin E, Daly MJ. Fine mapping in 94 inbred mouse strains using a high-density haplotype resource. Genetics. 2010 Jul;185(3):1081-95. Epub 2010 May 3.     PubMed 20439770     MGI     FullText

Kang HM, Zaitlen NA, Wade CM, Kirby A, Heckerman D, Daly MJ, Eskin E. Efficient control of population structure in model organism association mapping. Genetics. 2008 Mar;178(3):1709-23.     PubMed 18385116     MGI     FullText