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Project data set: Lake2   (2005)

Project SHIRPA assessment, C57BL/6J-Chr#A/J/NaJ mouse chromosome substitution panel

Animals were evaluated using the SHIRPA behavioral and neuromuscular assessment.

Study design: baseline survey; 1 cohort.
23 strains tested     female male     Test age: 8wks

Investigators Lake J, Donahue L, Davisson MT   [Details]

Part of a series: • physiology ... see Lake1
• SHIRPA ... this project ... Lake2
• behavior ... see Lake3
These projects characterize the B6.A consomic strain panel.

Protocol View phenotyping protocol and methods

Lake2
measurements



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          Ontologies
For downloads and additional info see bottom of page...  


appearance and coat color         SHIRPA  
Lake2
body presentation [score]  
      • pelvic elevation  • tail elevation  • body position  • hindlimb splay 
23 strains   age 8wks
  B6.A consomic
Lake2
color evaluation of plantar surface and forelimb digits
during supine restraint (score 0-2)
  [score]
23 strains   age 8wks
  B6.A consomic
 
behavior — anxiety         SHIRPA  
Lake2
frequency of behavioral displacement [n]  
      • defecation  • urination 
23 strains   age 8wks
  B6.A consomic
Lake2
degree of behavioral inhibition or arousal [score]  
      • transfer arousal  • freezing 
23 strains   age 8wks
  B6.A consomic
Lake2
frequency of behavioral displacement [n]  
      • defecation  • urination 
23 strains   age 8wks
  B6.A consomic
 
behavior — involuntary movement         SHIRPA  
Lake2
constant trembling in view-jar (score 0-2)   [score]
23 strains   age 8wks
  B6.A consomic
Lake2
short sporadic twitches in view-jar (score 0-2)   [score]
23 strains   age 8wks
  B6.A consomic
 
behavior — locomotor activity         SHIRPA  
Lake2
spontaneous activity level in view-jar (score 0-3)   [score]
23 strains   age 8wks
  B6.A consomic
 
behavior — wildness         SHIRPA  
Lake2
aggressive behavior [score]  
      • provoked biting  • irritability  • aggression  • vocalization 
23 strains   age 8wks
  B6.A consomic
 
nervous system — autonomic function         SHIRPA  
Lake2
autonomic function [score]  
      • palpebral closing  • piloerection  • airpuff startle reflex 
      • trunk curl  • hindlimb grasp  • lacrimal reflex  • salivary reflex 
23 strains   age 8wks
  B6.A consomic
 
nervous system — neuromuscular function         SHIRPA  
Lake2
muscle function and fitness [score]  
      • gait  • positional passivity 
      • body tone  • limb tone  • abdominal tone 
• response to tail suspension  • response to rotation 
23 strains   age 8wks
  B6.A consomic
 
nervous system — sensorimotor function         SHIRPA  
Lake2
motor responses to sensory stimulus [score]  
      • touch escape  • visual placing  • pinna (ear) reflex  • corneal reflex 
      • hindfoot withdrawal reflex  • cross extensor reflex 
      • righting reflex  • catalepsy  • negative geotaxis 
23 strains   age 8wks
  B6.A consomic



Number of mice tested per strain, for each measurement

  
Changelog There have been no updates or corrections to the data set since MPD release in Oct 2007  
Reference Related papers
Mice
Strain and animal info
Note
For SHIRPA scoring table see the project protocol.
Note
Caution: Very low sample sizes (N < 3) are present. [View table]
Note
Some measurements are not eligible for all-MPD pheno vs. pheno
correlations due to data characteristics or semantics [View list]

Lake2
downloads


Individual animal data
Table format (.csv)
Individual animal data in table format, with one row per animal and one column per measurement.
Individual animal data
List format (.csv)
Individual animal data organized as one row per animal / measurement reading.
Strain means (.csv) Strain means with SD, N, other summary statistics. One row per strain / sex / measurement.
No supplemental data for this project. 

 See also the MPD download center for more general data download options.





 




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