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MPD - Phenotype data: metric
methodologies
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metric
data collected manually using ruler, calipers, or scales
Investigators, papers, protocols
Ontologies
Measurements:
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•Inbred only
•Other only
•By strain panel
basic list
show overall averages
show C57BL/6J averages
show variable names (in red)
verbose descriptions
with checkboxes
body mass index (BMI)
metric
Ackert1
body mass index (BMI) [kg/m
2
]
• 6mo
• 12mo
• 20mo
• age comparison
32
strains
ages shown
Inbred
Reed1
body mass index (BMI)
[kg/m
2
]
28
strains
age
29-67wks
Inbred
Svenson4
body mass index (BMI)
[kg/m
2
]
28
strains
age
16wks
B6.PWD consomic
body size
metric
Ackert1
body length (tip of nose to base of tail) [cm]
• 6mo
• 12mo
• 20mo
• age comparison
32
strains
ages shown
Inbred
CGDpheno1
body length (tip of nose to base of tail)
[cm]
72
strains
age
13wks
Inbred
Reed1
body length (from base of lower incisors to base of anus)
[cm]
28
strains
age
29-67wks
Inbred
RIKEN-EAD1
body length (tip of the nose to base of the tail)
[mm]
51
strains
age
12wks
Inbred
Svenson4
body length (tip of nose to base of tail)
[cm]
28
strains
age
16wks
B6.PWD consomic
Chesler3
body length
[cm]
age
various
CC pre
RIKEN-EAD2
body length (tip of the nose to base of the tail)
[mm]
28
strains
age
12wks
wild-derived RBRC
tail length
metric
RIKEN-EAD1
tail length (base of tail to tip of tail)
[mm]
41
strains
age
12wks
Inbred
Chesler2
tail length
[cm]
62
strains
age
various
CC diallel
Chesler3
tail length
[cm]
age
various
CC pre
RIKEN-EAD2
tail length (base of tail to tip of tail)
[mm]
19
strains
age
12wks
wild-derived RBRC
bone — morphology — craniofacial
metric
Everett1
mandible distances [mm]
• anterior length
• post length
• mid length
• mid height
• condyle
• incisor condyle
• incisor gonion
• molar condyle
• molar arch
• incisor region
• ramus height
14
strains
age
8-9wks
Inbred
Everett1
mandible areas [mm
2
]
• anterior
• posterior
• teeth space
• ramus space
14
strains
age
8-9wks
Inbred
Vinyard1
gape morphology [mm]
• maximum gape
• massester attachment ratio
21
strains
age
9-12wks
Inbred
Vinyard1
mandible and mandibular condyle [mm]
• jaw length
• condyle length
• height of condyle articular surface
• condyle height above molar
• condyle angle of curvature [°]
21
strains
age
9-12wks
Inbred
bone — morphology — femur
metric
Donahue2
femoral dimensions [mm]
• length
• anterior-posterior width
• medial-lateral width
10
strains
age
16wks
Inbred
Chesler3
periosteal (outer) circumference, femoral mid-diaphysis
[mm]
age
various
CC pre
brain — pathology
metric
Marchuk1
infarct volume following surgically-induced focal cerebral ischemia
[mm
3
]
16
strains
age
11-13wks
Inbred
ear — morphology — size
metric
Churchill1
ear pinal length
[mm]
63
strains
age
7-8wks
8-way diallel
eye — morphology
metric
Chang1
eye diameter
[mm]
17
strains
age
>7wks
Inbred
Puk1
axial length [mm]
• left eye
• right eye
• eye comparison
4
strains
age
13wks
Inbred
Puk1
corneal thickness [µm]
• left eye
• right eye
• eye comparison
4
strains
age
13wks
Inbred
Puk1
depth of anterior eye chamber [mm]
• left eye
• right eye
• eye comparison
4
strains
age
13wks
Inbred
Puk1
lens thickness [mm]
• left eye
• right eye
• eye comparison
4
strains
age
13wks
Inbred
kidney — morphology — area
metric
Gupta1
kidney planar surface area [mm
2
]
• left
• right
• comparison
8
strains
age
postnatal d1
Inbred
Gupta1
normalized kidney planar surface area [mm
2
/g]
• left
• right
• comparison
7
strains
age
postnatal d1
Inbred
Gupta2
kidney planar surface area [mm
2
]
• left
• right
• comparison
10
strains
age
postnatal d1
BXH
Gupta2
normalized kidney planar surface area [mm
2
/g]
• left
• right
• comparison
10
strains
age
postnatal d1
BXH
kidney — morphology — length
metric
Chesler3
kidney length [cm]
• left
• right
• comparison
age
various
CC pre
kidney — morphology — volume
metric
Chesler3
kidney volume
[cm
3
]
age
various
CC pre
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