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Mouse strain data by gene or marker
MPD has these types of mouse strain characterization data associated with gene symbols or chromosome coordinate ranges:
    • SNP and genotype variation data
    • gene expression strain survey data
    • phenotype data tagged to specific genes or proteins


Search on gene symbol or name keyword:

See what's in a certain chromosome location range  
    You can enter bp eg. 4:85.74-86.43   or Mbp eg. 4:85740000-86430000
    Max is 5 Mbp


For larger regions start here


All chromosome coordinates in MPD are GRCm38. We import coordinates, nomenclature, and attributes for genes and markers from MGI on a regular basis. Please refer to MGI for authoritative / in-depth information on genes and features. Our authoritative source for gene nomenclature and coordinates for servicing database searches is MGI's MRK_List2.rpt download file. We retain these biotypes: genes, pseudogenes, gene segments, DNA segments, Mit markers, miR features, and QTLs. Gene annotation on genotype variation data and gene expression data are closely associated with supplied data and may vary from current MGI annotation.


See also:
• Working with gene sets in MPD   Import and export gene sets to/from other bioinformatic resources.

• Find genes / features where certain strains are highly polymorphic based on Sanger1 SNP data.

 




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