Home page
To link to MPD's home page, use
http://phenome.jax.org
Strain info
Use download file straininfo.csv to list strains in MPD, and to get MPD strain IDs.
To link to an MPD mouse strain page by vendor stock number:
http://phenome.jax.org/db/q?rtn=strains/details&stocknum=000671
Or to link to an MPD mouse strain page by (ascii) strain name:
http://phenome.jax.org/db/q?rtn=strains/details&aname=DBA/2J
Or to link to an MPD mouse strain page by internal MPD strain ID number:
http://phenome.jax.org/db/q?rtn=strains/details&strainid=8
Phenotype ontology
To link to
MPD's ontology navigator for a certain ontology term:
http://phenome.jax.org/db/q?rtn=meas/ontnav&reqid=VT:0001790
Phenotype data by ontology
Use download file ontology_mappings.csv to list ontology terms with mappings.
To link to MPD strain survey phenotype data mapped to a certain ontology term:
http://phenome.jax.org/db/q?rtn=meas/catlister&req=OVT:0001790
Phenotype data by project / data set
To link to a specific project / data set page (e.g. Peters1):
http://phenome.jax.org/db/q?rtn=projects/details&sym=Peters1
Specific phenotype measurement
To link to a specific MPD pheno measurement page (e.g. MPD:2909):
http://phenome.jax.org/db/qp?rtn=views/measplot&brieflook=2909
Specific gene/marker
To link to a specific gene/marker page (e.g. gene Abcd1):
http://phenome.jax.org/db/qp?rtn=markers/details&reqsym=Abcd1
Specific genomic location
To link to MPD's info by chr coordinate (e.g. chr 3 9,876,543 bp):
http://phenome.jax.org/db/q?rtn=views/search&req=3:9876543
SNP / genotype variation
For general purposes use: http://phenome.jax.org/SNP
It is possible to preload the initial query form in a number of ways to facilitate
retrievals... see below for possibilities. However due to webcrawler overuse issues
it's not possible to link directly to SNP/variation result tables.
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