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Linking to MPD for web developers


Here's a brief description of the URL interface to link to some common MPD pages and data views. If questions contact us at phenome@jax.org

MPD's data downloads page is also often of interest to developers.

Automated MPD usage (web crawlers etc.) is restricted.. click here for more info.


Home page
To link to MPD's home page, use    http://phenome.jax.org


Strain info
Use download file straininfo.csv to list strains in MPD, and to get MPD strain IDs.
To link to an MPD mouse strain page by vendor stock number:
    http://phenome.jax.org/db/q?rtn=strains/details&stocknum=000671
Or to link to an MPD mouse strain page by (ascii) strain name:
    http://phenome.jax.org/db/q?rtn=strains/details&aname=DBA/2J
Or to link to an MPD mouse strain page by internal MPD strain ID number:
    http://phenome.jax.org/db/q?rtn=strains/details&strainid=8


Phenotype ontology
To link to MPD's ontology navigator for a certain ontology term:
    http://phenome.jax.org/db/q?rtn=meas/ontnav&reqid=VT:0001790


Phenotype data by ontology
Use download file ontology_mappings.csv to list ontology terms with mappings.
To link to MPD strain survey phenotype data mapped to a certain ontology term:
    http://phenome.jax.org/db/q?rtn=meas/catlister&req=OVT:0001790


Phenotype data by project / data set
To link to a specific project / data set page (e.g. Peters1):
    http://phenome.jax.org/db/q?rtn=projects/details&sym=Peters1


Specific phenotype measurement
To link to a specific MPD pheno measurement page (e.g. MPD:2909):
    http://phenome.jax.org/db/qp?rtn=views/measplot&brieflook=2909


Specific gene/marker
To link to a specific gene/marker page (e.g. gene Abcd1):
    http://phenome.jax.org/db/qp?rtn=markers/details&reqsym=Abcd1


Specific genomic location
To link to MPD's info by chr coordinate (e.g. chr 3 9,876,543 bp):
    http://phenome.jax.org/db/q?rtn=views/search&req=3:9876543


SNP / genotype variation
For general purposes use: http://phenome.jax.org/SNP

It is possible to preload the initial query form in a number of ways to facilitate
retrievals... see below for possibilities. However due to webcrawler overuse issues
it's not possible to link directly to SNP/variation result tables.








 




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