As of 20-May-2013
Phenotype strain survey data
- Number of phenotype strain survey projects: 194
List
- Number of phenotypic measurements (traits) catalogued in MPD: 3666
-
Number of measurements covering both sexes:
2251
covering just one sex:
1415
(Sexes are segregated in all MPD analyses)
- Number of strain mean data points in MPD:
230293
- Number of accessioned individual animal value data points:
1034117
- Number of strains tested per measurement... median=22
SNP and genotype variation data
- Overview and annotation
- Number of available data sets: 17 List data sets
- Strains: classical inbred and various strain panels
- Number of SNP strain calls: about 2200 million
- Number of indel strain calls: about 21 million
- Number of structural variant strain calls: about 600,000
- Number of genome-wide locations represented: about 65 millon
Gene expression strain survey data
- Number of available gene expression strain survey data sets: 12 List data sets
- Strains: classical inbred, HMDP (AXB, BXA, BXD, BXH) and ILSXISS
- Number of expression strain mean data points: about 12 million
- Number of distinct dataset x probeset instances: about 320,000
- Number of distinct probeset IDs in database: about 125,000
Mouse strains
|
